Publications (Google Scholar Profile)

SIMPLEs: a single-cell RNA sequencing imputation strategy preserving gene modules and cell clusters variation
Zhirui Hu*, Songpeng Zu*, Jun S. Liu. NAR Genomics and Bioinformatics 2020

VISAR: an interactive tool for dissecting chemical features learned by deep neural network QSAR models
Qingyang Ding, Siyu Hou, Songpeng Zu, Yonghui Zhang, Shao Li. Bioinformatics 2020

Modeling Attention Flow on Graphs
Xiaoran Xu, Songpeng Zu, Chengliang Gao, Yuan Zhang, Wei Feng. NIPS 2018 Workshop on Relational Representation Learning

Hulu video recommendation: from relevance to reasoning
Xiaoran Xu, Laming Chen, Songpeng Zu, Hanning Zhou. Proceedings of the 12th ACM Conference on Recommender Systems

Backprop-Q: Generalized Backpropagation for Stochastic Computation Graphs
Xiaoran Xu, Songpeng Zu, Yuan Zhang, Hanning Zhou, Wei Feng. NIPS 2018 Workshop on Deep Reinforcement Learning

Evaluating the molecule-based prediction of clinical drug responses in cancer
Zijian Ding, Songpeng Zu, Jin Gu. Bioinformatics 2016

Global optimization-based inference of chemogenomic features from drug–target interactions
Songpeng Zu, Ting Chen, Shao Li. Bioinformatics 2015

[* denotes equal contribution]